Q1) Determine where and how similar two 100 Mb DNA sequences are. Assume that similarity will vary over the lengths of the sequences.
1.Restate the biological problem in computational terms.
2.What kinds of data do you need?
3.What controls do you need?
4.Do you need to define the problem's conditions more precisely? How?
5.How would you represent the data and the problem?
6.Describe an algorithm for solving the problem.
Q2) Now do the same for two entire genomes. Does your algorithm scale? What other phenomena could you encounter that could confuse your algorithm or results? ( This question you can give it to me later on another post)